PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24824.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 279aa    MW: 30926.6 Da    PI: 8.1461
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24824.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-192979155
                      AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++ GVr+++ +g+WvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  mrna24824.1-v1.0-hybrid 29 CKFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAACLLRG 79
                             799*******.7*********33....36**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.18E-332986No hitNo description
PfamPF008472.5E-132979IPR001471AP2/ERF domain
SMARTSM003805.8E-383093IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-203088IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-283088IPR001471AP2/ERF domain
PROSITE profilePS5103219.9153087IPR001471AP2/ERF domain
PRINTSPR003674.8E-83142IPR001471AP2/ERF domain
PRINTSPR003674.8E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGLQSQKHEK GISAEKESKL KQRSSNTKCK FVGVRQRPSG KWVAEIKDTT KKIRMWLGTF  60
ETAEEAARAY DEAACLLRGS NTRTNFTSSH VASNSPLSLK IKNLLNHKKS LTQQSPSTSN  120
TMKTTPKAST RVSCTITDNN IIHSSGYYNG HCSSQLSFKT HNIEVSGDAY RPDLSNCIGN  180
NVQVPAMLHL DQPWQFLSGF DQLPNNHEGL DSTKGIATGV SHSAAEPNQL TEFEHAKVER  240
QMTSASFYAM NEVNEYLENT YDDALWDLPT LSQLFCLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-153186359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-41AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461684.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLM5WFH41e-104M5WFH4_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s21090.14e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-44related to AP2 11